| # Refer to all C/Fortran routines by their name prefixed by C_ |
| useDynLib(stats, .registration = TRUE, .fixes = "C_") |
| |
| import(graphics) |
| importFrom(grDevices, as.graphicsAnnot, dev.cur, dev.flush, dev.hold, |
| dev.interactive, dev.new, dev.set, devAskNewPage, |
| extendrange, n2mfrow, palette, xy.coords) |
| importFrom(utils, count.fields, flush.console, str, tail) |
| |
| export(.checkMFClasses, .getXlevels, .MFclass, .nknots.smspl, |
| acf, acf2AR, add.scope, |
| add1, addmargins, aggregate,aggregate.ts, AIC, alias, anova, |
| aov, approx, approxfun, ar, ar.burg, ar.mle, ar.ols, ar.yw, |
| arima, arima.sim, arima0, arima0.diag, ARMAacf, ARMAtoMA, |
| as.dendrogram, as.dist, as.formula, as.hclust, as.stepfun, |
| as.ts, asOneSidedFormula, ave, bandwidth.kernel, BIC, binomial, |
| biplot, Box.test, bw.bcv, bw.nrd, bw.nrd0, bw.SJ, bw.ucv, C, |
| cancor, case.names, ccf, cmdscale, coef, coefficients, |
| complete.cases, confint, confint.default, confint.lm, constrOptim, |
| contr.SAS, contr.helmert, contr.poly, contr.sum, |
| contr.treatment, contrasts, "contrasts<-", convolve, |
| cooks.distance, cophenetic, cor, cov, cov.wt, cov2cor, |
| covratio, cpgram, cutree, cycle, |
| D, DF2formula, |
| dbeta, dbinom, dcauchy, |
| dchisq, decompose, delete.response, deltat, dendrapply, |
| density, deriv, deriv3, deviance, dexp, df, df.kernel, |
| df.residual, dfbeta, dfbetas, dffits, dgamma, dgeom, dhyper, |
| diffinv, dist, dlnorm, dlogis, dmultinom, dnbinom, dnorm, |
| dpois, drop.scope, drop.terms, drop1, dsignrank, dt, |
| dummy.coef, dummy.coef.lm, dunif, dweibull, dwilcox, ecdf, eff.aovlist, |
| effects, embed, estVar, end, expand.model.frame, extractAIC, |
| factanal, factor.scope, family, fft, filter, fitted, |
| fitted.values, fivenum, formula, frequency, ftable, Gamma, |
| gaussian, get_all_vars, getCall, getInitial, glm, glm.control, |
| glm.fit, hasTsp, hat, hatvalues, hclust, heatmap, HoltWinters, |
| influence, influence.measures, integrate, interaction.plot, |
| inverse.gaussian, IQR, is.empty.model, is.leaf, is.mts, |
| is.stepfun, is.ts, is.tskernel, isoreg, KalmanForecast, |
| KalmanLike, KalmanRun, KalmanSmooth, kernapply, kernel, kmeans, |
| knots, ksmooth, lag, lag.plot, line, lm, lm.fit, .lm.fit, |
| lm.influence, lm.wfit, loadings, loess, loess.control, |
| loess.smooth, logLik, loglin, lowess, ls.diag, ls.print, lsfit, |
| mad, mahalanobis, make.link, makeARIMA, makepredictcall, |
| manova, mauchly.test, median, medpolish, model.extract, |
| model.frame, model.matrix, model.offset, model.response, |
| model.tables, model.weights, monthplot, mvfft, na.action, |
| na.contiguous, na.exclude, na.fail, na.omit, na.pass, |
| napredict, naprint, naresid, nextn, nlm, nlminb, nls, |
| nls.control, NLSstAsymptotic, NLSstClosestX, NLSstLfAsymptote, |
| NLSstRtAsymptote, nobs, numericDeriv, offset, optim, optimHess, |
| optimise, optimize, order.dendrogram, p.adjust, |
| p.adjust.methods, pacf, pairwise.table, pbeta, pbinom, pcauchy, |
| pchisq, pexp, pf, pgamma, pgeom, phyper, plclust, plnorm, |
| plogis, pnbinom, pnorm, poisson, poly, polym, power, ppoints, |
| ppois, ppr, PP.test, prcomp, predict, preplot, .preformat.ts, princomp, |
| printCoefmat, profile, proj, promax, psignrank, pt, ptukey, |
| punif, pweibull, pwilcox, qbeta, qbinom, qcauchy, qchisq, qexp, |
| qf, qgamma, qgeom, qhyper, qlnorm, qlogis, qnbinom, qnorm, |
| qpois, qqline, qqnorm, qqplot, qsignrank, qt, qtukey, quantile, |
| quasi, quasibinomial, quasipoisson, qunif, qweibull, qwilcox, |
| r2dtable, rbeta, rbinom, rcauchy, rchisq, read.ftable, |
| rect.hclust, reformulate, relevel, reorder, replications, |
| reshape, resid, residuals, rexp, rf, rgamma, rgeom, rhyper, |
| rlnorm, rlogis, rmultinom, rnbinom, rnorm, rpois, rsignrank, |
| rstandard, rstudent, rt, runif, runmed, rweibull, rwilcox, |
| rWishart, scatter.smooth, screeplot, sd, se.contrast, |
| selfStart, setNames, sigma, simulate, smooth, smooth.spline, |
| smoothEnds, sortedXyData, spec.ar, spec.pgram, spec.taper, |
| spectrum, spline, splinefun, splinefunH, SSD, SSasymp, |
| SSasympOff, SSasympOrig, SSbiexp, SSfol, SSfpl, SSgompertz, |
| SSlogis, SSmicmen, SSweibull, start, stat.anova, step, stepfun, |
| stl, StructTS, summary.manova, supsmu, symnum, termplot, terms, |
| time, toeplitz, ts, ts.intersect, ts.plot, ts.union, tsdiag, |
| tsp, "tsp<-", tsSmooth, TukeyHSD, uniroot, update, var, |
| variable.names, varimax, .vcov.aliased, vcov, weighted.mean, |
| weighted.residuals, weights, window, "window<-", write.ftable, |
| xtabs, pbirthday, qbirthday) |
| |
| ## from ctest |
| export(ansari.test, bartlett.test, binom.test, chisq.test, cor.test, |
| fisher.test, fligner.test, friedman.test, kruskal.test, |
| ks.test, mantelhaen.test, mauchly.test, mcnemar.test, |
| mood.test, oneway.test, pairwise.prop.test, pairwise.t.test, |
| pairwise.wilcox.test, poisson.test, power.anova.test, |
| power.prop.test, power.t.test, prop.test, prop.trend.test, |
| quade.test, shapiro.test, t.test, var.test, wilcox.test) |
| |
| export(plot.spec.coherency, plot.spec.phase) |
| |
| |
| ## methods used by R itself. |
| export(density.default, model.frame.default, plot.ecdf, plot.stepfun, |
| summary.aov, summary.lm, summary.stepfun, update.formula) |
| |
| ## historical |
| export(aggregate.data.frame, median.default, model.matrix.default, |
| model.matrix.lm, plot.ts, predict.glm, predict.lm, |
| residuals.glm, residuals.lm, summary.glm, terms.formula, |
| update.default) |
| |
| ## model.matrix.lm: robustbase |
| ## residuals.glm: DAMisc, car, haplo.stats, lasso2, plsRbeta, plsRglm, rms, spgwr |
| ## residuals.lm: CADFest, robustbase |
| ## update.default: MuMIn, spatstat |
| |
| |
| ## register all the methods for generics elsewhere in case namespace is |
| ## loaded but not currently attached. |
| S3method("[", acf) |
| S3method("[", formula) |
| S3method("[", terms) |
| S3method("[", ts) |
| S3method("[", tskernel) |
| S3method("[<-", ts) |
| S3method("[[", dendrogram) |
| S3method(add1, default) |
| S3method(add1, glm) |
| S3method(add1, lm) |
| S3method(add1, mlm) |
| S3method(aggregate, data.frame) |
| S3method(aggregate, default) |
| S3method(aggregate, "formula") |
| S3method(aggregate, ts) |
| S3method(AIC, default) |
| S3method(AIC, logLik) |
| S3method(alias, formula) |
| S3method(alias, lm) |
| S3method(ansari.test, default) |
| S3method(ansari.test, formula) |
| S3method(ar.burg, default) |
| S3method(ar.burg, mts) |
| S3method(ar.yw, default) |
| S3method(ar.yw, mts) |
| S3method(as.data.frame, aovproj) |
| S3method(as.data.frame, ftable) |
| S3method(as.data.frame, logLik) |
| S3method(as.dendrogram, dendrogram) |
| S3method(as.dendrogram, hclust) |
| S3method(as.dist, default) |
| S3method(as.hclust, dendrogram) |
| S3method(as.hclust, default) |
| S3method(as.hclust, twins) |
| S3method(as.matrix, dist) |
| S3method(as.matrix, ftable) |
| S3method(as.stepfun, default) |
| S3method(as.stepfun, isoreg) |
| S3method(as.table, ftable) |
| S3method(as.ts, default) |
| S3method(anova, glm) |
| S3method(anova, glmlist) |
| S3method(anova, lm) |
| S3method(anova, lmlist) |
| S3method(anova, loess) |
| S3method(anova, mlm) |
| S3method(anova, nls) |
| S3method(bartlett.test, default) |
| S3method(bartlett.test, formula) |
| S3method(BIC, default) |
| S3method(BIC, logLik) |
| S3method(biplot, default) |
| S3method(biplot, princomp) |
| S3method(biplot, prcomp) |
| S3method(case.names, default) |
| S3method(case.names, lm) |
| S3method(cbind, ts) |
| S3method(coef, aov) |
| S3method(coef, Arima) |
| S3method(coef, default) |
| S3method(coef, listof) |
| S3method(coef, maov) |
| S3method(coef, nls) |
| S3method(confint, default) |
| S3method(confint, glm) |
| S3method(confint, lm) |
| S3method(confint, nls) |
| S3method(cooks.distance, glm) |
| S3method(cooks.distance, lm) |
| S3method(cophenetic, default) |
| S3method(cophenetic, dendrogram) |
| S3method(cor.test, default) |
| S3method(cor.test, formula) |
| S3method(cut, dendrogram) |
| S3method(cycle, default) |
| S3method(cycle, ts) |
| S3method(deltat, default) |
| S3method(density, default) |
| S3method(deriv, default) |
| S3method(deriv, formula) |
| S3method(deriv3, default) |
| S3method(deriv3, formula) |
| S3method(deviance, default) |
| S3method(deviance, glm) |
| S3method(deviance, lm) |
| S3method(deviance, mlm) |
| S3method(deviance, nls) |
| S3method(diffinv, default) |
| S3method(diffinv, ts) |
| S3method(diffinv, vector) |
| S3method(df.residual, default) |
| S3method(df.residual, nls) |
| S3method(dfbeta, lm) |
| S3method(dfbetas, lm) |
| S3method(diff, ts) |
| S3method(drop1, default) |
| S3method(drop1, glm) |
| S3method(drop1, lm) |
| S3method(drop1, mlm) |
| S3method(dummy.coef, aovlist) |
| S3method(dummy.coef, lm) |
| S3method(effects, glm) |
| S3method(effects, lm) |
| S3method(end, default) |
| S3method(estVar, SSD) |
| S3method(estVar, mlm) |
| S3method(extractAIC, aov) |
| S3method(extractAIC, coxph) |
| S3method(extractAIC, glm) |
| S3method(extractAIC, lm) |
| S3method(extractAIC, negbin) |
| S3method(extractAIC, survreg) |
| S3method(family, glm) |
| S3method(family, lm) |
| S3method(fitted, default) |
| S3method(fitted, isoreg) |
| S3method(fitted, kmeans) |
| S3method(fitted, nls) |
| S3method(fitted, smooth.spline) |
| S3method(fligner.test, default) |
| S3method(fligner.test, formula) |
| S3method(format, dist) |
| S3method(format, ftable) |
| S3method(formula, character) |
| S3method(formula, data.frame) |
| S3method(formula, default) |
| S3method(formula, formula) |
| S3method(formula, glm) |
| S3method(formula, lm) |
| S3method(formula, nls) |
| S3method(formula, terms) |
| S3method(frequency, default) |
| S3method(friedman.test, default) |
| S3method(friedman.test, formula) |
| S3method(ftable, default) |
| S3method(ftable, formula) |
| S3method(getCall, default) |
| S3method(getInitial, default) |
| S3method(getInitial, formula) |
| S3method(getInitial, selfStart) |
| S3method(hatvalues, lm) |
| S3method(hatvalues, smooth.spline) |
| S3method(identify, hclust) |
| S3method(influence, glm) |
| S3method(influence, lm) |
| S3method(kernapply, default) |
| S3method(kernapply, ts) |
| S3method(kernapply, tskernel) |
| S3method(kernapply, vector) |
| S3method(knots, stepfun) |
| S3method(kruskal.test, default) |
| S3method(kruskal.test, formula) |
| S3method(labels, dendrogram) |
| S3method(labels, dist) |
| S3method(labels, lm) |
| S3method(labels, terms) |
| S3method(lag, default) |
| S3method(lines, isoreg) |
| S3method(lines, stepfun) |
| S3method(lines, ts) |
| S3method(logLik, Arima) |
| S3method(logLik, glm) |
| S3method(logLik, lm) |
| S3method(logLik, logLik) |
| S3method(logLik, nls) |
| S3method(makepredictcall, default) |
| S3method(makepredictcall, poly) |
| S3method(mauchly.test, SSD) |
| S3method(mauchly.test, mlm) |
| S3method(median, default) |
| S3method(merge, dendrogram) |
| S3method(model.frame, aovlist) |
| S3method(model.frame, default) |
| S3method(model.frame, glm) |
| S3method(model.frame, lm) |
| S3method(model.matrix, default) |
| S3method(model.matrix, lm) |
| S3method(model.tables, aov) |
| S3method(model.tables, aovlist) |
| S3method(monthplot, default) |
| S3method(monthplot, stl) |
| S3method(monthplot, StructTS) |
| S3method(monthplot, ts) |
| S3method(mood.test, default) |
| S3method(mood.test, formula) |
| S3method(na.action, default) |
| S3method(na.contiguous, default) |
| S3method(na.exclude, data.frame) |
| S3method(na.exclude, default) |
| S3method(na.fail, default) |
| S3method(na.omit, data.frame) |
| S3method(na.omit, default) |
| S3method(na.omit, ts) |
| S3method(napredict, default) |
| S3method(napredict, exclude) |
| S3method(naprint, default) |
| S3method(naprint, exclude) |
| S3method(naprint, omit) |
| S3method(naresid, default) |
| S3method(naresid, exclude) |
| S3method(NLSstAsymptotic, sortedXyData) |
| S3method(NLSstClosestX, sortedXyData) |
| S3method(NLSstLfAsymptote, sortedXyData) |
| S3method(NLSstRtAsymptote, sortedXyData) |
| S3method(nobs, default) |
| S3method(nobs, dendrogram) |
| S3method(nobs, glm) |
| S3method(nobs, lm) |
| S3method(nobs, logLik) |
| S3method(nobs, nls) |
| S3method(Ops, ts) |
| S3method(pacf, default) |
| S3method(plot, acf) |
| S3method(plot, decomposed.ts) |
| S3method(plot, dendrogram) |
| S3method(plot, density) |
| S3method(plot, ecdf) |
| S3method(plot, hclust) |
| S3method(plot, HoltWinters) |
| S3method(plot, isoreg) |
| S3method(plot, lm) |
| S3method(plot, medpolish) |
| S3method(plot, mlm) |
| S3method(plot, ppr) |
| S3method(plot, prcomp) |
| S3method(plot, princomp) |
| S3method(plot, profile.nls) |
| S3method(plot, spec) |
| S3method(plot, stepfun) |
| S3method(plot, stl) |
| S3method(plot, ts) |
| S3method(plot, tskernel) |
| S3method(plot, TukeyHSD) |
| S3method(ppr, default) |
| S3method(ppr, formula) |
| S3method(prcomp, default) |
| S3method(prcomp, formula) |
| S3method(predict, ar) |
| S3method(predict, Arima) |
| S3method(predict, arima0) |
| S3method(predict, glm) |
| S3method(predict, HoltWinters) |
| S3method(predict, lm) |
| S3method(predict, loess) |
| S3method(predict, mlm) |
| S3method(predict, poly) |
| S3method(predict, ppr) |
| S3method(predict, nls) |
| S3method(predict, prcomp) |
| S3method(predict, princomp) |
| S3method(predict, smooth.spline) |
| S3method(predict, smooth.spline.fit) |
| S3method(predict, StructTS) |
| S3method(princomp, default) |
| S3method(princomp, formula) |
| S3method(print, acf) |
| S3method(print, anova) |
| S3method(print, aov) |
| S3method(print, aovlist) |
| S3method(print, ar) |
| S3method(print, Arima) |
| S3method(print, arima0) |
| S3method(print, dendrogram) |
| S3method(print, density) |
| S3method(print, dist) |
| S3method(print, dummy_coef) |
| S3method(print, dummy_coef_list) |
| S3method(print, ecdf) |
| S3method(print, factanal) |
| S3method(print, family) |
| S3method(print, formula) |
| S3method(print, ftable) |
| S3method(print, glm) |
| S3method(print, hclust) |
| S3method(print, HoltWinters) |
| S3method(print, htest) |
| S3method(print, infl) |
| S3method(print, integrate) |
| S3method(print, isoreg) |
| S3method(print, kmeans) |
| S3method(print, lm) |
| S3method(print, loadings) |
| S3method(print, loess) |
| S3method(print, logLik) |
| S3method(print, medpolish) |
| S3method(print, mtable) |
| S3method(print, nls) |
| S3method(print, pairwise.htest) |
| S3method(print, power.htest) |
| S3method(print, ppr) |
| S3method(print, prcomp) |
| S3method(print, princomp) |
| S3method(print, smooth.spline) |
| S3method(print, stepfun) |
| S3method(print, stl) |
| S3method(print, StructTS) |
| S3method(print, summary.aov) |
| S3method(print, summary.aovlist) |
| S3method(print, summary.ecdf) |
| S3method(print, summary.glm) |
| S3method(print, summary.lm) |
| S3method(print, summary.loess) |
| S3method(print, summary.manova) |
| S3method(print, summary.nls) |
| S3method(print, summary.ppr) |
| S3method(print, summary.prcomp) |
| S3method(print, summary.princomp) |
| S3method(print, tables_aov) |
| S3method(print, TukeyHSD) |
| S3method(print, terms) |
| S3method(print, ts) |
| S3method(print, tskernel) |
| S3method(print, tukeyline) |
| S3method(print, tukeysmooth) |
| S3method(print, xtabs) |
| S3method(profile, nls) |
| S3method(profiler, nls) |
| S3method(proj, aov) |
| S3method(proj, aovlist) |
| S3method(proj, default) |
| S3method(proj, lm) |
| S3method(quade.test, default) |
| S3method(quade.test, formula) |
| S3method(qqnorm, default) |
| S3method(qr, lm) |
| S3method(quantile, default) |
| S3method(quantile, ecdf) |
| S3method(quantile, POSIXt) |
| S3method(relevel, default) |
| S3method(relevel, factor) |
| S3method(relevel, ordered) |
| S3method(reorder, default) |
| S3method(reorder, dendrogram) |
| S3method(residuals, default) |
| S3method(residuals, glm) |
| S3method(residuals, isoreg) |
| S3method(residuals, HoltWinters) |
| S3method(residuals, lm) |
| S3method(residuals, nls) |
| S3method(residuals, smooth.spline) |
| S3method(residuals, tukeyline) |
| S3method(rev, dendrogram) |
| S3method(rstandard, glm) |
| S3method(rstandard, lm) |
| S3method(rstudent, glm) |
| S3method(rstudent, lm) |
| S3method(screeplot, default) |
| S3method(se.contrast, aov) |
| S3method(se.contrast, aovlist) |
| S3method(selfStart, default) |
| S3method(selfStart, formula) |
| S3method(sigma, default) |
| S3method(sigma, mlm) |
| S3method(simulate, lm) |
| S3method(sortedXyData, default) |
| S3method(str, dendrogram) |
| S3method(summary, aov) |
| S3method(summary, aovlist) |
| S3method(summary, ecdf) |
| S3method(summary, glm) |
| S3method(summary, infl) |
| S3method(summary, lm) |
| S3method(summary, loess) |
| S3method(summary, manova) |
| S3method(summary, mlm) |
| S3method(summary, nls) |
| S3method(summary, ppr) |
| S3method(summary, prcomp) |
| S3method(summary, princomp) |
| S3method(summary, stepfun) |
| S3method(summary, stl) |
| S3method(summary, tukeysmooth) |
| S3method(SSD, mlm) |
| S3method(start, default) |
| S3method(str, logLik) |
| S3method(t, ts) |
| S3method(t.test, default) |
| S3method(t.test, formula) |
| S3method(terms, default) |
| S3method(terms, formula) |
| S3method(terms, terms) |
| S3method(time, default) |
| S3method(time, ts) |
| S3method(tsdiag, Arima) |
| S3method(tsdiag, arima0) |
| S3method(tsdiag, StructTS) |
| S3method(tsSmooth, StructTS) |
| S3method(TukeyHSD, aov) |
| S3method(update, default) |
| S3method(update, formula) |
| S3method(var.test, default) |
| S3method(var.test, formula) |
| S3method(variable.names, default) |
| S3method(variable.names, lm) |
| S3method(vcov, Arima) |
| S3method(vcov, aov) |
| S3method(vcov, glm) |
| S3method(vcov, lm) |
| S3method(vcov, summary.lm) |
| S3method(vcov, summary.glm) |
| S3method(vcov, mlm) |
| S3method(vcov, nls) |
| S3method(weighted.mean, Date) |
| S3method(weighted.mean, default) |
| S3method(weighted.mean, difftime) |
| S3method(weighted.mean, POSIXct) |
| S3method(weighted.mean, POSIXlt) |
| S3method(weights, default) |
| S3method(weights, glm) |
| S3method(weights, nls) |
| S3method(wilcox.test, default) |
| S3method(wilcox.test, formula) |
| S3method(window, default) |
| S3method(window, ts) |
| S3method("window<-", ts) |
| |
| ## Cannot register in utils ... |
| S3method("update", "packageStatus") |
