src/library/stats/man/summary.lm.Rd

% File src/library/stats/man/summary.lm.Rd
% Part of the R package, https://www.R-project.org
% Copyright 1995-2013 R Core Team
% Distributed under GPL 2 or later

\name{summary.lm}
\alias{summary.lm}
\alias{summary.mlm}% mlm is *not* mentioned at all
\alias{print.summary.lm}
\title{Summarizing Linear Model Fits}
\usage{
\method{summary}{lm}(object, correlation = FALSE, symbolic.cor = FALSE, \dots)

\method{print}{summary.lm}(x, digits = max(3, getOption("digits") - 3),
      symbolic.cor = x$symbolic.cor,
      signif.stars = getOption("show.signif.stars"), \dots)
}
\arguments{
  \item{object}{an object of class \code{"lm"}, usually, a result of a
    call to \code{\link{lm}}.}
  \item{x}{an object of class \code{"summary.lm"}, usually, a result of a
    call to \code{summary.lm}.}
  \item{correlation}{logical; if \code{TRUE}, the correlation matrix of
    the estimated parameters is returned and printed.}
  \item{digits}{the number of significant digits to use when printing.}
  \item{symbolic.cor}{logical. If \code{TRUE}, print the correlations in
    a symbolic form (see \code{\link{symnum}}) rather than as numbers.}
  \item{signif.stars}{logical. If \code{TRUE}, \sQuote{significance stars}
    are printed for each coefficient.}
  \item{\dots}{further arguments passed to or from other methods.}
}
\description{
\code{summary} method for class \code{"lm"}.
}
\details{
  \code{print.summary.lm} tries to be smart about formatting the
  coefficients, standard errors, etc. and additionally gives
  \sQuote{significance stars} if \code{signif.stars} is \code{TRUE}.

  Aliased coefficients are omitted in the returned object but restored
  by the \code{print} method.

  Correlations are printed to two decimal places (or symbolically): to
  see the actual correlations print \code{summary(object)$correlation}
  directly.
}
\value{
  The function \code{summary.lm} computes and returns a list of summary
  statistics of the fitted linear model given in \code{object}, using
  the components (list elements) \code{"call"} and \code{"terms"}
  from its argument, plus
  \item{residuals}{the \emph{weighted} residuals, the usual residuals
    rescaled by the square root of the weights specified in the call to
    \code{lm}.}
  \item{coefficients}{a \eqn{p \times 4}{p x 4} matrix with columns for
    the estimated coefficient, its standard error, t-statistic and
    corresponding (two-sided) p-value.  Aliased coefficients are omitted.}
  \item{aliased}{named logical vector showing if the original
    coefficients are aliased.}
  \item{sigma}{the square root of the estimated variance of the random
    error
    \deqn{\hat\sigma^2 = \frac{1}{n-p}\sum_i{w_i R_i^2},}{\sigma^2 = 1/(n-p) Sum(w[i] R[i]^2),}
    where \eqn{R_i}{R[i]} is the \eqn{i}-th residual, \code{residuals[i]}.}
  \item{df}{degrees of freedom, a 3-vector \eqn{(p, n-p, p*)}, the first
    being the number of non-aliased coefficients, the last being the total
    number of coefficients.}
  \item{fstatistic}{(for models including non-intercept terms)
    a 3-vector with the value of the F-statistic with
    its numerator and denominator degrees of freedom.}
  \item{r.squared}{\eqn{R^2}, the \sQuote{fraction of variance explained by
    the model},
    \deqn{R^2 = 1 - \frac{\sum_i{R_i^2}}{\sum_i(y_i- y^*)^2},}{R^2 = 1 - Sum(R[i]^2) / Sum((y[i]- y*)^2),}
    where \eqn{y^*}{y*} is the mean of \eqn{y_i}{y[i]} if there is an
    intercept and zero otherwise.}
  \item{adj.r.squared}{the above \eqn{R^2} statistic
    \sQuote{\emph{adjusted}}, penalizing for higher \eqn{p}.}
  \item{cov.unscaled}{a \eqn{p \times p}{p x p} matrix of (unscaled)
    covariances of the \eqn{\hat\beta_j}{coef[j]}, \eqn{j=1, \dots, p}.}
  \item{correlation}{the correlation matrix corresponding to the above
    \code{cov.unscaled}, if \code{correlation = TRUE} is specified.}
  \item{symbolic.cor}{(only if \code{correlation} is true.)  The value
    of the argument \code{symbolic.cor}.}
  \item{na.action}{from \code{object}, if present there.}
}
\seealso{
  The model fitting function \code{\link{lm}}, \code{\link{summary}}.

  Function \code{\link{coef}} will extract the matrix of coefficients
  with standard errors, t-statistics and p-values.
}
\examples{
\dontshow{utils::example("lm", echo = FALSE)}
##-- Continuing the  lm(.) example:
coef(lm.D90)  # the bare coefficients
sld90 <- summary(lm.D90 <- lm(weight ~ group -1))  # omitting intercept
sld90
coef(sld90)  # much more

## model with *aliased* coefficient:
lm.D9. <- lm(weight ~ group + I(group != "Ctl"))
Sm.D9. <- summary(lm.D9.)
Sm.D9. #  shows the NA NA NA NA  line
stopifnot(length(cc <- coef(lm.D9.)) == 3, is.na(cc[3]),
          dim(coef(Sm.D9.)) == c(2,4), Sm.D9.$df == c(2, 18, 3))
}
\keyword{regression}
\keyword{models}