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The 'new' R logo was added in early 2016.
Rlogo.svg is the master copy, and is copyrighted. See its text comment
and doc/COPYRIGHTS for its licence.
Rlogo.pdf is a conversion to scalable PDF, done by rsvg-convert.
logo.jpg is an update to the new logo of a 100x76 file: it is no
longer used within R (but is used by some packages).
favicon.ico contains 16x16 and 32x32 PNG files (with transparent
backgrounds and anti-aliasing) converted from Rlogo.svg in Photoshop,
and bundled by
icotool -c -o favicon.ico icon_16x16.png icon_32x32.png
on Linux. These are 32-bit full-colour PNGs (and smaller than the
previous version with a palette).